Date: 10/7/2009
Presenter: Lipika
Paper: Chromatin organization marks exon-intron structure
Presentation:
Date: 9/23/2009
Presenter: Yizhou
Paper: Protein sectors evolutionary units of three dimensional structure 2009 Cell
Presentation: view
Date: 9/2/2009
Presenter: Albert
Paper: Domain shuffling and the evolution of vertebrates
Presentation:
Date: 8/7/2009
Presenter: Chen
Paper: Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome
Presentation:
Date: 7/17/2009
Presenter: Nuttinee
Paper: The transferome of metabolic genes explored: analysis of the
horizontal transfer of enzyme encoding genes in unicellular eukaryotes
Presentation:
Date: 6/17/2009
Presenter: Zhen
Paper: Models from experiments: combinatorial drug perturbations of cancer cells
Presentation: view
Date: 6/5/2009
Presenter: Maya
Paper: A survey of visualization tools for biological network analysis
Presentation: view
Date: 5/15/2009
Presenter: Nuttinee
Paper: Microbial co-habitation and lateral gene transfer: what transposases can tell us
Presentation:
Date: 4/22/2009
Presenter: Lipika
Paper: Using biological networks to search for interacting loci in genome-wide association studies
Presentation: view
Date: 3/6/2009
Presenter: Yizhou
Paper: Computational structure based redesign of enzyme activity
Presentation: view
Date: 2/18/2009
Presenter: Albert
Paper: Gene Expression Levels Are a Target of Recent Natural Selection in the Human Genome
Presentation: view
Date: 2/6/2009
Presenter: Chen
Paper: Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence
Presentation:
Date: 1/23/2009
Presenter: Zhen
Paper: Network-based classification of breast cancer metastasis
Presentation:
Date: 1/9/2009
Presenter: Maya
Paper: Neural networks for genetic epidemiology: past, present, and future
Presentation: view
Date: 12/12/2008
Presenter: Nuttinee
Paper: An ancient evolutionary origin of genes associated with human genetic diseases
Presentation:
Date: 11/21/2008
Presenter: Lipika
Paper: Gene prioritization through genomic data fusion
Presentation:view
Date: 10/3/2008
Presenter: Chen
Paper: Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
Presentation:
Date: 9/25/2008
Presenter: Maya
Paper: A human phenome-interactome network of protein complexes implicated in genetic disorders
Presentation: view
Date: 8/8/2008
Presenter: Zhen
Paper: Assembly reflects evolution of protein complexes, paper supplemental material
Presentation: view
Supplemental Material: 3D Complex: A structural classification of protein complexes
Date: 7/25/2008
Presenter: Lipika
Paper: Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network
Presentation: view
Date: 6/27/2008
Presenter: Albert
Paper: Detecting non-coding selective pressure in coding regions
Presentation: view part 1, part 2
Date: 6/05/2008
Presenter: Zhen
Paper: A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans Paper supplemental material
Presentation: view
Supplemental Material: A map of human protein interactions derived from co-expression of human mRNAs and their orthologs,
Genome-Wide Prediction of C. elegans Genetic Interactions, Analysis of the human protein interactome and comparison with yeast, worm, and fly interaction datasests, A Probabilistic Functional Network of Yeast Genes, Lethality and centrality in protein networks, Scale-free Networks
Date: 5/16/2008
Presenter: Maya
Paper: Network-based prediction of protein function
Presentation: view
Date: 4/16/2008
Presenter: Albert
Paper: Modular epistasis in yeast metabolism
Presentation: view part 1, part 2
Date: 3/14/2008
Presenter: Albert
Paper: On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer
Presentation: view
Date: 2/15/2008
Presenter: Nuttinee
Paper:
Presentation:
Date: 1/23/2008
Presenter: Zhen
Paper: Network-based classification of breast cancer metastasis
Presentation: dowload, Supplemental material
Date: 12/21/2007
Presenter: Lipika
Paper: Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysis
Presentation:view
Date: 12/07/2007
Presenter: Albert
Paper: 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
Presentation: view
Date: 11/9/2007
Presenter: Nuttinee
Paper: "Elevated rates of protein secretion, evolution, and disease among
tissue-specific genes" Genome Res. 14:54-61, 2004
Presentation:
